app_diffusion.h

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//---------------------------------------------------------------------------
//
//    FCST: Fuel Cell Simulation Toolbox
//
//    Copyright (C) 2013 by Energy Systems Design Laboratory, University of Alberta
//
//    This software is distributed under the MIT License.
//    For more information, see the README file in /doc/LICENSE
//
//    - Class: app_diffusion.h
//    - Description:
//    - Developers: M. Sabharwal, M. Secanell, A. Kosakian
//
//---------------------------------------------------------------------------

#ifndef _FUELCELL__APP_DIFFUSION__H
#define _FUELCELL__APP_DIFFUSION__H

//-- OpenFCST
#include <application_core/optimization_block_matrix_application.h>
#include <utils/operating_conditions.h>
#include <materials/PureGas.h>
#include <materials/GasMixture.h>
#include <layers/gas_diffusion_layer.h>
#include <equations/ficks_transport_equation.h>
#include <equations/equation_auxiliaries.h>
#include <postprocessing/data_out.h>


// Use namespace of deal.II
using namespace dealii;
using namespace FuelCellShop::Equation::DebugTools;

namespace FuelCell
{
   
    namespace Application
    {
        //---------------------------------------------------------------------------
        //---------------------------------------------------------------------------
        //---------------------------------------------------------------------------
        template<int dim>
        class AppDiffusion : public OptimizationBlockMatrixApplication<dim>
        {
        public:
            

            
            AppDiffusion( boost::shared_ptr< FuelCell::ApplicationCore::ApplicationData > data = 
            boost::shared_ptr< FuelCell::ApplicationCore::ApplicationData >() );
            
            ~AppDiffusion();
            
            virtual void declare_parameters(ParameterHandler& param);
            
            virtual void initialize(ParameterHandler& param);
            
              virtual void initialize_solution (FEVector& initial_guess,
                                                std::shared_ptr<Function<dim> > initial_function = std::shared_ptr<Function<dim> >());         
              
            

            
            virtual void cell_matrix(MatrixVector&                                 cell_matrices,
                                     const typename DoFApplication<dim>::CellInfo& cell_info);
            
            virtual void cell_residual(FuelCell::ApplicationCore::FEVector&          cell_res,
                                       const typename DoFApplication<dim>::CellInfo& cell_info);
            virtual void bdry_matrix(MatrixVector&                                 bdry_matrices,
                                     const typename DoFApplication<dim>::FaceInfo&  bdry_info);
            
            virtual void bdry_residual(FuelCell::ApplicationCore::FEVector&          bdry_res,
                                       const typename DoFApplication<dim>::FaceInfo& bdry_info);
            

            
            virtual void dirichlet_bc(std::map<unsigned int, double>& boundary_values) const;

            virtual double evaluate (const FuelCell::ApplicationCore::FEVectors& src);
            
            virtual void data_out(const std::string&         filename,
                                  const FEVectors& src);
            
            

            
            virtual void bdry_responses(std::vector<double>&                                                     dst,
                                        const typename FuelCell::ApplicationCore::DoFApplication<dim>::FaceInfo& bdry_info,
                                        const FuelCell::ApplicationCore::FEVector& src);
            

            
            unsigned int get_solution_index();
            
        protected:            


            


            FuelCell::OperatingConditions OC;
            
            boost::shared_ptr<FuelCellShop::Material::PureGas> solute;
            
            
            
            boost::shared_ptr<FuelCellShop::Material::PureGas> solvent;
            
                        
            


            boost::shared_ptr< FuelCellShop::Layer::GasDiffusionLayer<dim> > CGDL;
            
            


            FuelCellShop::Equation::FicksTransportEquation<dim> ficks_transport_equation;

        private:
            


            FuelCellShop::Equation::VariableInfo get_xi();
            
            DebugOutput<dim> equation_debug_output;              
            
        };
        
    } // Application
    
} // FuelCell

#endif